| | Publication Year | Title | Author(s) |
| 1 | 11-Jan-2024 | High-performance enrichment-based genome sequencing to support the investigation of hepatitis A virus outbreaks. | Zufan, Sara E; Mercoulia, Karolina; Kwong, Jason C ; Judd, Louise M; Howden, Benjamin P ; Seemann, Torsten; Stinear, Timothy P |
| 2 | 3-Jun-2022 | State-wide genomic epidemiology investigations of COVID-19 in healthcare workers in 2020 Victoria, Australia: Qualitative thematic analysis to provide insights for future pandemic preparedness. | Watt, Anne E; Sherry, Norelle L ; Andersson, Patiyan; Lane, Courtney R; Johnson, Sandra; Wilmot, Mathilda; Horan, Kristy; Sait, Michelle; Ballard, Susan A; Crachi, Christina; Beck, Dianne J; Marshall, Caroline; Kainer, Marion A; Stuart, Rhonda; McGrath, Christian; Kwong, Jason C ; Bass, Pauline; Kelley, Peter G; Crowe, Amy; Guy, Stephen; Macesic, Nenad; Smith, Karen; Williamson, Deborah A; Seemann, Torsten; Howden, Benjamin P |
| 3 | 19-May-2022 | SARS-CoV-2 infection results in immune responses in the respiratory tract and peripheral blood that suggest mechanisms of disease severity. | Zhang, Wuji; Chua, Brendon Y; Selva, Kevin J; Kedzierski, Lukasz; Ashhurst, Thomas M; Haycroft, Ebene R; Shoffner-Beck, Suzanne K; Hensen, Luca; Boyd, David F; James, Fiona L ; Mouhtouris, Effie ; Kwong, Jason C ; Chua, Kyra Y L ; Drewett, George P ; Copaescu, Ana ; Dobson, Julie E ; Rowntree, Louise C; Habel, Jennifer R; Allen, Lilith F; Koay, Hui-Fern; Neil, Jessica A; Gartner, Matthew J; Lee, Christina Y; Andersson, Patiyan; Khan, Sadid F; Blakeway, Luke; Wisniewski, Jessica; McMahon, James H; Vine, Erica E; Cunningham, Anthony L; Audsley, Jennifer; Thevarajan, Irani; Seemann, Torsten; Sherry, Norelle L ; Amanat, Fatima; Krammer, Florian; Londrigan, Sarah L; Wakim, Linda M; King, Nicholas J C; Godfrey, Dale I; Mackay, Laura K; Thomas, Paul G; Nicholson, Suellen; Arnold, Kelly B; Chung, Amy W; Holmes, Natasha E ; Smibert, Olivia C ; Trubiano, Jason ; Gordon, Claire L ; Nguyen, Thi H O; Kedzierska, Katherine |
| 4 | 12-Apr-2022 | Multi-site implementation of whole genome sequencing for hospital infection control: A prospective genomic epidemiological analysis. | Sherry, Norelle L ; Gorrie, Claire L; Kwong, Jason C ; Higgs, Charlie; Stuart, Rhonda L; Marshall, Caroline; Ballard, Susan A; Sait, Michelle; Korman, Tony M; Slavin, Monica A; Lee, Robyn S; Graham, Maryza; Leroi, Marcel J ; Worth, Leon J; Chan, Hiu Tat; Seemann, Torsten; Grayson, M Lindsay ; Howden, Benjamin P |
| 5 | 26-Jan-2022 | Optimising genomic approaches for identifying vancomycin-resistant Enterococcus faecium transmission in healthcare settings. | Higgs, Charlie; Sherry, Norelle L ; Seemann, Torsten; Horan, Kristy; Walpola, Hasini; Kinsella, Paul; Bond, Katherine; Williamson, Deborah A; Marshall, Caroline; Kwong, Jason C ; Grayson, M Lindsay ; Stinear, Timothy P; Gorrie, Claire L; Howden, Benjamin P |
| 6 | Nov-2021 | Key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria: a systematic analysis. | Gorrie, Claire L; Da Silva, Anders Gonçalves; Ingle, Danielle J; Higgs, Charlie; Seemann, Torsten; Stinear, Timothy P; Williamson, Deborah A; Kwong, Jason C ; Grayson, M Lindsay ; Sherry, Norelle L ; Howden, Benjamin P |
| 7 | Sep-2021 | Defective Severe Acute Respiratory Syndrome Coronavirus 2 Immune Responses in an Immunocompromised Individual With Prolonged Viral Replication. | Gordon, Claire L ; Smibert, Olivia C ; Holmes, Natasha E ; Chua, Kyra Y L ; Rose, Morgan T ; Drewett, George P ; James, Fiona L ; Mouhtouris, Effie ; Nguyen, Thi H O; Zhang, Wuji; Kedzierski, Lukasz; Rowntree, Louise C; Chua, Brendon Y; Caly, Leon; Catton, Mike G; Druce, Julian; Sait, Michelle; Seemann, Torsten; Sherry, Norelle L ; Howden, Benjamin P ; Kedzierska, Katherine; Kwong, Jason C ; Trubiano, Jason |
| 8 | 2021 | Search and Contain: Impact of an integrated genomic and epidemiological surveillance and response program for control of carbapenemase-producing Enterobacterales. | Lane, Courtney R; Brett, Judith; Schultz, Mark; Gorrie, Claire L; Stevens, Kerrie; Cameron, Donna R M; St George, Siobhan; van Diemen, Annaliese; Easton, Marion; Stuart, Rhonda L; Sait, Michelle; Peleg, Anton Y; Stewardson, Andrew J; Cheng, Allen C; Spelman, Denis W; Waters, Mary Jo; Ballard, Susan A; Sherry, Norelle L ; Williamson, Deborah A; Romanes, Finn; Sutton, Brett; Kwong, Jason C ; Seemann, Torsten; Goncalves da Silva, Anders; Stephens, Nicola; Howden, Benjamin P |
| 9 | 8-Dec-2020 | Comprehensive Genomic Investigation of Adaptive Mutations Driving the Low-Level Oxacillin Resistance Phenotype in Staphylococcus aureus. | Giulieri, Stefano G ; Guérillot, Romain; Kwong, Jason C ; Monk, Ian R; Hayes, Ashleigh S; Daniel, Diane; Baines, Sarah; Sherry, Norelle L ; Holmes, Natasha E ; Ward, Peter; Gao, Wei; Seemann, Torsten; Stinear, Timothy P; Howden, Benjamin P |
| 10 | Nov-2020 | Case Report: Confirmation by Metagenomic Sequencing of Visceral Leishmaniasis in an Immunosuppressed Returned Traveler. | Williams, Eloise; Isles, Nicole S; Seemann, Torsten; Kilpatrick, Trevor; Grigg, Andrew P ; Leroi, Marcel J ; Howden, Benjamin P ; Kwong, Jason C |
| 11 | Sep-2020 | Validation of a single-step, single-tube reverse transcription loop-mediated isothermal amplification assay for rapid detection of SARS-CoV-2 RNA. | Lee, Jean Y H; Best, Nickala; McAuley, Julie; Porter, Jessica L; Seemann, Torsten; Schultz, Mark B; Sait, Michelle; Orlando, Nicole; Mercoulia, Karolina; Ballard, Susan A; Druce, Julian; Tran, Thomas; Catton, Mike G; Pryor, Melinda J; Cui, Huanhuan L; Luttick, Angela; McDonald, Sean; Greenhalgh, Arran; Kwong, Jason C ; Sherry, Norelle L ; Graham, Maryza; Hoang, Tuyet; Herisse, Marion; Pidot, Sacha J; Williamson, Deborah A; Howden, Benjamin P ; Monk, Ian R; Stinear, Timothy P |
| 12 | 26-Aug-2019 | Genomics for molecular epidemiology and detecting transmission of carbapenemase-producing Enterobacterales in Victoria, Australia, 2012-2016. | Sherry, Norelle L ; Lane, Courtney R; Kwong, Jason C ; Schultz, Mark; Sait, Michelle; Stevens, Kerrie; Ballard, Susan; Gonçalves da Silva, Anders; Seemann, Torsten; Gorrie, Claire L; Stinear, Timothy P; Williamson, Deborah A; Brett, Judith; van Diemen, Annaliese; Easton, Marion; Howden, Benjamin P |
| 13 | 16-Jan-2019 | Reconstruction of the Genomes of Drug-Resistant Pathogens for Outbreak Investigation through Metagenomic Sequencing. | Mu, Andre; Kwong, Jason C ; Isles, Nicole S; Gonçalves da Silva, Anders; Schultz, Mark B; Ballard, Susan A; Lane, Courtney R; Carter, Glen P; Williamson, Deborah A; Seemann, Torsten; Stinear, Timothy P; Howden, Benjamin P |
| 14 | 4-Sep-2018 | The changing landscape of vancomycin-resistant Enterococcus faecium in Australia: a population-level genomic study. | Lee, Robyn S; Gonçalves da Silva, Anders; Baines, Sarah L; Strachan, Janet; Ballard, Susan; Carter, Glen P; Kwong, Jason C ; Schultz, Mark B; Bulach, Dieter M; Seemann, Torsten; Stinear, Timothy P; Howden, Benjamin P |
| 15 | Mar-2018 | Whole-genome sequencing reveals transmission of gonococcal antibiotic resistance among men who have sex with men: an observational study. | Kwong, Jason C ; Chow, Eric P F; Stevens, Kerrie; Stinear, Timothy P; Seemann, Torsten; Fairley, Christopher K; Chen, Marcus Y; Howden, Benjamin P |
| 16 | 2018 | Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak. | Kwong, Jason C ; Lane, Courtney R; Romanes, Finn; Gonçalves da Silva, Anders; Easton, Marion; Cronin, Katie; Waters, Mary Jo; Tomita, Takehiro; Stevens, Kerrie; Schultz, Mark B; Baines, Sarah L; Sherry, Norelle L ; Carter, Glen P; Mu, Andre; Sait, Michelle; Ballard, Susan A; Seemann, Torsten; Stinear, Timothy P; Howden, Benjamin P |
| 17 | Jul-2017 | Emergence of multidrug resistance in locally-acquired human infections with Salmonella Typhimurium in Australia owing to a new clade harbouring blaCTX-M-9. | Sparham, Sarah J; Kwong, Jason C ; Valcanis, Mary; Easton, Marion; Trott, Darren J; Seemann, Torsten; Stinear, Timothy P; Howden, Benjamin P |
| 18 | Apr-2016 | Rapid Emergence and Evolution of Staphylococcus aureus Clones Harboring fusC-Containing Staphylococcal Cassette Chromosome Elements. | Baines, Sarah L; Howden, Benjamin P ; Heffernan, Helen; Stinear, Timothy P; Carter, Glen P; Seemann, Torsten; Kwong, Jason C ; Ritchie, Stephen R; Williamson, Deborah A |
| 19 | Feb-2016 | Prospective Whole-Genome Sequencing Enhances National Surveillance of Listeria monocytogenes. | Kwong, Jason C ; Mercoulia, Karolina; Tomita, Takehiro; Easton, Marion; Li, Hua Y; Bulach, Dieter M; Stinear, Timothy P; Seemann, Torsten; Howden, Benjamin P |