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| | Publication Year | Title | Author(s) |
| 21 | 4-Jan-2023 | An ISO-certified genomics workflow for identification and surveillance of antimicrobial resistance. | Sherry, Norelle L ; Horan, Kristy A; Ballard, Susan A; Gonҫalves da Silva, Anders; Gorrie, Claire L; Schultz, Mark B; Stevens, Kerrie; Valcanis, Mary; Sait, Michelle L; Stinear, Timothy P; Howden, Benjamin P ; Seemann, Torsten |
| 22 | 2023 | Genomic investigation of the emergence of vanD vancomycin-resistant Enterococcus faecium. | Baines, Sarah L; Guérillot, Romain; Ballard, Susan; Johnson, Paul D R ; Stinear, Timothy P; Roberts, Sally; Howden, Benjamin P |
| 3 | Jul-2022 | The demand-supply gap for faecal microbiota transplantation in Australia and New Zealand: a survey of infectious diseases physicians. | Manning, Laurens; Gosbell, Iain B; Howden, Benjamin P ; Tong, Steven |
| 4 | 14-Jun-2022 | Niche-specific genome degradation and convergent evolution shaping Staphylococcus aureus adaptation during severe infections. | Giulieri, Stefano G ; Guérillot, Romain; Duchene, Sebastian; Hachani, Abderrahman; Daniel, Diane; Seemann, Torsten; Davis, Joshua S; Tong, Steven Y C; Young, Bernadette C; Wilson, Daniel J; Stinear, Timothy P; Howden, Benjamin P |
| 5 | 3-Jun-2022 | State-wide genomic epidemiology investigations of COVID-19 in healthcare workers in 2020 Victoria, Australia: Qualitative thematic analysis to provide insights for future pandemic preparedness. | Watt, Anne E; Sherry, Norelle L ; Andersson, Patiyan; Lane, Courtney R; Johnson, Sandra; Wilmot, Mathilda; Horan, Kristy; Sait, Michelle; Ballard, Susan A; Crachi, Christina; Beck, Dianne J; Marshall, Caroline; Kainer, Marion A; Stuart, Rhonda; McGrath, Christian; Kwong, Jason C ; Bass, Pauline; Kelley, Peter G; Crowe, Amy; Guy, Stephen; Macesic, Nenad; Smith, Karen; Williamson, Deborah A; Seemann, Torsten; Howden, Benjamin P |
| 6 | May-2022 | Lab-in-a-van: Rapid SARS-CoV-2 testing response with a mobile laboratory. | Ballard, Susan A; Graham, Maryza; David, Debra; Hoang, Tuyet; Donald, Angela; Sait, Michelle; Isles, Nicole; Matlock, Amelia; Yallop, Sarah; Bek, Mark; Howden, Benjamin P ; Stinear, Timothy P |
| 7 | 12-Apr-2022 | Multi-site implementation of whole genome sequencing for hospital infection control: A prospective genomic epidemiological analysis. | Sherry, Norelle L ; Gorrie, Claire L; Kwong, Jason C ; Higgs, Charlie; Stuart, Rhonda L; Marshall, Caroline; Ballard, Susan A; Sait, Michelle; Korman, Tony M; Slavin, Monica A; Lee, Robyn S; Graham, Maryza; Leroi, Marcel J ; Worth, Leon J; Chan, Hiu Tat; Seemann, Torsten; Grayson, M Lindsay ; Howden, Benjamin P |
| 8 | 18-Feb-2022 | Gut microbiome signatures and host colonization with multidrug-resistant bacteria. | Isles, Nicole S; Mu, Andre; Kwong, Jason C ; Howden, Benjamin P ; Stinear, Timothy P |
| 9 | 26-Jan-2022 | Optimising genomic approaches for identifying vancomycin-resistant Enterococcus faecium transmission in healthcare settings. | Higgs, Charlie; Sherry, Norelle L ; Seemann, Torsten; Horan, Kristy; Walpola, Hasini; Kinsella, Paul; Bond, Katherine; Williamson, Deborah A; Marshall, Caroline; Kwong, Jason C ; Grayson, M Lindsay ; Stinear, Timothy P; Gorrie, Claire L; Howden, Benjamin P |
| 10 | 3-Dec-2021 | Emergence and global spread of Listeria monocytogenes main clinical clonal complex. | Moura, Alexandra; Lefrancq, Noémie; Wirth, Thierry; Leclercq, Alexandre; Borges, Vítor; Gilpin, Brent; Dallman, Timothy J; Frey, Joachim; Franz, Eelco; Nielsen, Eva M; Thomas, Juno; Pightling, Arthur; Howden, Benjamin P ; Tarr, Cheryl L; Gerner-Smidt, Peter; Cauchemez, Simon; Salje, Henrik; Brisse, Sylvain; Lecuit, Marc |
| 11 | Nov-2021 | Key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria: a systematic analysis. | Gorrie, Claire L; Da Silva, Anders Gonçalves; Ingle, Danielle J; Higgs, Charlie; Seemann, Torsten; Stinear, Timothy P; Williamson, Deborah A; Kwong, Jason C ; Grayson, M Lindsay ; Sherry, Norelle L ; Howden, Benjamin P |
| 12 | 20-Oct-2021 | Daptomycin Resistance Occurs Predominantly in vanA-Type Vancomycin-Resistant Enterococcus faecium in Australasia and Is Associated With Heterogeneous and Novel Mutations. | Li, Lucy; Higgs, Charlie; Turner, Adrianna M; Nong, Yi; Gorrie, Claire L; Sherry, Norelle L ; Dyet, Kristin H; Seemann, Torsten; Williamson, Deborah A; Stinear, Timothy P; Howden, Benjamin P ; Carter, Glen P |
| 13 | Oct-2021 | Low-Cost, Open-Source Device for High-Performance Fluorescence Detection of Isothermal Nucleic Acid Amplification Reactions. | Buultjens, Andrew H; Vandelannoote, Koen; Sharkey, Liam K; Howden, Benjamin P ; Monk, Ian R; Lee, Jean Y H; Stinear, Timothy P |
| 14 | 20-Sep-2021 | Genomic epidemiology and antimicrobial resistance mechanisms of imported typhoid in Australia. | Ingle, Danielle J; Andersson, Patiyan; Valcanis, Mary; Wilmot, Mathilda; Easton, Marion; Lane, Courtney; Barden, Jessica; da Silva, Anders Gonçalves; Seemann, Torsten; Horan, Kristy; Ballard, Susan A; Sherry, Norelle L ; Williamson, Deborah A; Howden, Benjamin P |
| 15 | 13-Sep-2021 | Accessible Platform for High-Throughput COVID-19 Molecular Diagnostics and Genome Sequencing Using a Repurposed 3D Printer for RNA Extraction. | Vandelannoote, Koen; Buultjens, Andrew H; Li, Lucy; Sharkey, Liam K; Herisse, Marion; Pidot, Sacha J; Hoang, Tuyet; Howden, Benjamin P ; Monk, Ian R; Seemann, Torsten; Lee, Jean Y H; Stinear, Timothy P |
| 16 | Sep-2021 | Defective Severe Acute Respiratory Syndrome Coronavirus 2 Immune Responses in an Immunocompromised Individual With Prolonged Viral Replication. | Gordon, Claire L ; Smibert, Olivia C ; Holmes, Natasha E ; Chua, Kyra Y L ; Rose, Morgan T ; Drewett, George P ; James, Fiona L ; Mouhtouris, Effie ; Nguyen, Thi H O; Zhang, Wuji; Kedzierski, Lukasz; Rowntree, Louise C; Chua, Brendon Y; Caly, Leon; Catton, Mike G; Druce, Julian; Sait, Michelle; Seemann, Torsten; Sherry, Norelle L ; Howden, Benjamin P ; Kedzierska, Katherine; Kwong, Jason C ; Trubiano, Jason |
| 17 | Sep-2021 | A multi-institutional outbreak of New Delhi metallo-β-lactamase-producing Escherichia coli with subsequent acquisition of the Klebsiella pneumoniae carbapenemase gene. | Solter, Ester; Kwong, Jason C ; Walton, Aaron; Sherry, Norelle L ; Howden, Benjamin P ; Grayson, M Lindsay ; Schwartz, David; Temkin, Elizabeth; Frenk, Sammy; Carmeli, Yehuda; Schwaber, Mitchell J |
| 18 | May-2021 | Pilot study of a combined genomic and epidemiologic surveillance program for hospital-acquired multidrug-resistant pathogens across multiple hospital networks in Australia. | Sherry, Norelle L ; Lee, Robyn S; Gorrie, Claire L; Kwong, Jason C ; Stuart, Rhonda L; Korman, Tony M; Marshall, Caroline; Higgs, Charlie; Chan, Hiu Tat; Graham, Maryza; Johnson, Paul D R ; Leroi, Marcel J ; Reed, Caroline; Richards, Michael J; Slavin, Monica A; Worth, Leon J; Howden, Benjamin P ; Grayson, M Lindsay |
| 19 | Apr-2021 | Multi-site assessment of rapid, point-of-care antigen testing for the diagnosis of SARS-CoV-2 infection in a low-prevalence setting: A validation and implementation study. | Muhi, Stephen; Tayler, Nick; Hoang, Tuyet; Ballard, Susan A; Graham, Maryza; Rojek, Amanda; Kwong, Jason C ; Trubiano, Jason ; Smibert, Olivia C ; Drewett, George P ; James, Fiona L ; Gardiner, Emma; Chea, Socheata; Isles, Nicole; Sait, Michelle; Pasricha, Shivani; Taiaroa, George; McAuley, Julie; Williams, Eloise; Gibney, Katherine B; Stinear, Timothy P; Bond, Katherine; Lewin, Sharon R; Putland, Mark; Howden, Benjamin P ; Williamson, Deborah A |
| 20 | 16-Mar-2021 | Genomic Insights Into Last-Line Antimicrobial Resistance in Multidrug-Resistant Staphylococcus and Vancomycin-Resistant Enterococcus. | Turner, Adrianna M; Lee, Jean Y H; Gorrie, Claire L; Howden, Benjamin P ; Carter, Glen P |
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